Making whole genome multiple alignments usable for biologists

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Summary: Here we describe a set of tools implemented within the Galaxy platform designed to make analysis of multiple genome alignments truly accessible for biologists. These tools are available through both a web-based graphical user interface and a command-line interface.

Availability and Implementation: This open-source toolset was implemented in Python and has been integrated into the online data analysis platform Galaxy (public web access:; download: Additional help is available as a live supplement from;

Supplementary information: Supplementary data are available at Bioinformatics online.

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