ImageJ-MATLAB: a bidirectional framework for scientific image analysis interoperability

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Abstract

Summary:

ImageJ-MATLAB is a lightweight Java library facilitating bi-directional interoperability between MATLAB and ImageJ. By defining a standard for translation between matrix and image data structures, researchers are empowered to select the best tool for their image-analysis tasks.

Availability and Implementation:

Freely available extension to ImageJ2 (http://imagej.net/Downloads). Installation and use instructions available at http://imagej.net/MATLAB_Scripting. Tested with ImageJ 2.0.0-rc-54, Java 1.8.0_66 and MATLAB R2015b.

Contact:

eliceiri@wisc.edu

Supplementary information:

Supplementary data are available at Bioinformatics online.

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