DeepBlueR: large-scale epigenomic analysis in R

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Motivation:While large amounts of epigenomic data are publicly available, their retrieval in a form suitable for downstream analysis is a bottleneck in current research. The DeepBlue Epigenomic Data Server provides a powerful interface and API for filtering, transforming, aggregating and downloading data from several epigenomic consortia.Results:To make public epigenomic data conveniently available for analysis in R, we developed an R/Bioconductor package that connects to the DeepBlue Epigenomic Data Server, enabling users to quickly gather and transform epigenomic data from selected experiments for analysis in the Bioconductor ecosystem.Availability and Implementation: 3.3, Bioconductor or markus.list@mpi-inf.mpg.deSupplementary information:Supplementary data are available at Bioinformatics online.

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