TOWARDS COMPUTER AIDED DESIGN (CAD) OF USEFUL MICROORGANISMS
DNA sequence quality trimming and vector removal
Tricross
A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling
A probabilistic method for identifying start codons in bacterial genomes
Gene selection for sample classification based on gene expression data
Statistical estimation of cluster boundaries in gene expression profile data
Differential expression of genes coding for ribosomal proteins in different human tissues
Estimation of P-values for global alignments of protein sequences
Minimum conflict
Taxonomy workbench
How to reconstruct a large genetic network from n gene perturbations in fewer than n 2 easy steps
Visualizing plant metabolomic correlation networks using clique–metabolite matrices
SPiD
A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells
Evolution of amino acid biosynthesis and enzymes with broad substrate specificity
MELTING, computing the melting temperature of nucleic acid duplex
Progenetix.net
Sequence type analysis and recombinational tests (START)
Promoter Extraction from GenBank (PEG)
mmsearch
ProPred
TMCompare
ToolShop
EVA
MEGA2
CONSEL