OPEN BIOINFORMATICS
Genome-wide analysis of Bkm sequences (GATA repeats): predominant association with sex chromosomes and potential role in higher order chromatin organization and function
Directed indices for exploring gene expression data
Statistical tests for identifying differentially expressed genes in time-course microarray experiments
Computer simulation of the cellular arrangement using physical model in early cleavage of the nematode Caenorhabditis elegans
Evaluation of annotation strategies using an entire genome sequence
Automated generation and refinement of protein signatures: case study with G-protein coupled receptors
Protein structure comparison by probability-based matching of secondary structure elements
A segment alignment approach to protein comparison
Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments
Construction of reliable protein–protein interaction networks with a new interaction generality measure
Feature selection and transduction for prediction of molecular bioactivity for drug design
Client–Server environment for high-performance gene expression data analysis
GAAS: Gene Array Analyzer Software for management, analysis and visualization of gene expression data
AFLPinSilico, simulating AFLP fingerprints
PGAGENE: integrating quantitative gene-specific results from the NHLBI Programs for Genomic Applications
Perfect phylogeny haplotyper: haplotype inferral using a tree model
Phylogenetic Web Profiler
EPPS: mining the COG database by an extended phylogenetic patterns search
Java editor for biological pathways
GoFish finds genes with combinations of Gene Ontology attributes
RECSIM and INDSTATS: probabilities of identity in general genealogies
Interpreting peptide mass spectra by VEMS