PseuRECA
Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA
A comparison of statistical methods for analysis of high density oligonucleotide array data
Differential expression in SAGE
Class prediction and discovery using gene microarray and proteomics mass spectroscopy data
Serial BLAST searching
Greedy method for inferring tandem duplication history
A hidden Markov model for progressive multiple alignment
Molecular evaluation using in silico protein interaction profiles
Identification of functional links between genes using phylogenetic profiles
Probabilistic scoring measures for profile–profile comparison yield more accurate short seed alignments
Development of a four-body statistical pseudo-potential to discriminate native from non-native protein conformations
Rapid classification of a protein fold family using a statistical analysis of dipolar couplings
Pandit
Evaluation of ontology development tools for bioinformatics
MrBayes 3
AGenDA
RankGene
UniFrag and GenomePrimer
GenoMap, a circular genome data viewer
ClustalW-MPI
ESTWeb
PISCES
QAlign
Digital extractor