PseuRECA : genome annotation and gene context analysis for Pseudomonas aeruginosa PAO1
Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA
A comparison of statistical methods for analysis of high density oligonucleotide array data
Differential expression in SAGE : accounting for normal between-library variation
Class prediction and discovery using gene microarray and proteomics mass spectroscopy data : curses, caveats, cautions
Serial BLAST searching
Greedy method for inferring tandem duplication history
A hidden Markov model for progressive multiple alignment
Molecular evaluation using in silico protein interaction profiles
Identification of functional links between genes using phylogenetic profiles
Probabilistic scoring measures for profile–profile comparison yield more accurate short seed alignments
Development of a four-body statistical pseudo-potential to discriminate native from non-native protein conformations
Rapid classification of a protein fold family using a statistical analysis of dipolar couplings
Pandit : a database of protein and associated nucleotide domains with inferred trees
Evaluation of ontology development tools for bioinformatics
MrBayes 3 : Bayesian phylogenetic inference under mixed models
AGenDA : homology-based gene prediction
RankGene : identification of diagnostic genes based on expression data
UniFrag and GenomePrimer : selection of primers for genome-wide production of unique amplicons
GenoMap, a circular genome data viewer
ClustalW-MPI : ClustalW analysis using distributed and parallel computing
ESTWeb : bioinformatics services for EST sequencing project
PISCES : a protein sequence culling server
QAlign : quality-based multiple alignments with dynamic phylogenetic analysis
Digital extractor : analysis of digital differential display output