Silent DNA
Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence
Early bioinformatics
Automatic design of gene-specific sequence tags for genome-wide functional studies
A comparative study of machine-learning methods to predict the effects of single nucleotide polymorphisms on protein function
MGraph
Linking the growth inhibition response from the National Cancer Institute's anticancer screen to gene expression levels and other molecular target data
In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon
Parametric alignment of ordered trees
A simple and efficient algorithm for gene selection using sparse logistic regression
Normality of oligonucleotide microarray data and implications for parametric statistical analyses
Towards the in silico identification of class II restricted T-cell epitopes
Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks
Metabolomics spectral formatting, alignment and conversion tools (MSFACTs)
Efficient remote homology detection using local structure
Missing-value estimation using linear and non-linear regression with Bayesian gene selection
PDB file parser and structure class implemented in Python
TSGDB
MASV—Multiple (BLAST) Annotation System Viewer
GeneHuggers
Bio WareDB
Gene Expression Dynamics Inspector (GEDI)
BLAST++
libsequence
PreP
NCL
MetaGeneAlyse