Defining transcription modules using large-scale gene expression data
CEBS object model for systems biology data, SysBio-OM
Bayesian hierarchical error model for analysis of gene expression data
DNA microarray normalization methods can remove bias from differential protein expression analysis of 2D difference gel electrophoresis results
ProMode: a database of normal mode analyses on protein molecules with a full-atom model
Phylogenetic trees based on gene content
Constructing an enzyme-centric view of metabolism
Network-based regulatory pathways analysis
Fragment assembly with short reads
Molecular Genetics Information System (MOLGENIS): alternatives in developing local experimental genomics databases
Gene annotation from scientific literature using mappings between keyword systems
Designing and executing scientific workflows with a programmable integrator
Efficient selection of unique and popular oligos for large EST databases†
A weighted least-squares approach for inferring phylogenies from incomplete distance matrices
Speeding up whole-genome alignment by indexing frequency vectors
Repair-FunMap: a functional database of proteins of the DNA repair systems
The DISOPRED server for the prediction of protein disorder
Identifying multiple alignment regions satisfying simple formulas and patterns
Web-based kinetic modelling using JWS Online
STING Contacts: a web-based application for identification and analysis of amino acid contacts within protein structure and across protein interfaces
TIP: protein backtranslation aided by genetic algorithms
F2CS: FSSP to CATH and SCOP prediction server
Ligand Depot: a data warehouse for ligands bound to macromolecules
Pathway Miner: extracting gene association networks from molecular pathways for predicting the biological significance of gene expression microarray data