A graph-theoretic approach for the separation of b and y ions in tandem mass spectra
Understanding protein dispensability through machine-learning analysis of high-throughput data
RAP: a new computer program for de novo identification of repeated sequences in whole genomes
Stepwise detection of recombination breakpoints in sequence alignments
CIS: compound importance sampling method for protein–DNA binding site p-value estimation
Improving promoter prediction Improving promoter prediction for the NNPP2.2 algorithm: a case study using Escherichia coli DNA sequences
Biological sequence analysis through the one-dimensional percolation transform and its enhanced version
PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
Improving conformational searches by geometric screening
A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis
Reliability analysis of microarray data using fuzzy c-means and normal mixture modeling based classification methods
Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification
A simple procedure for estimating the false discovery rate
ESTminer: a Web interface for mining EST contig and cluster databases
DNAFSMiner: a web-based software toolbox to recognize two types of functional sites in DNA sequences
A simple tool for drawing proteolytic peptide maps
HyPhy: hypothesis testing using phylogenies
APART: Automated Preprocessing for NMR Assignments with Reduced Tedium
Database driven test case generation for protein–protein docking
COPS—Cis/trans peptide bond conformation prediction of amino acids on the basis of secondary structure information
Implementation of a gene expression index calculation method based on the PDNN model
LabArray: real-time imaging and analytical tool for microarrays
ESTminer: a suite of programs for gene and allele identification
MedKit: a helper toolkit for automatic mining of MEDLINE/PubMed citations
DictyMOLD-a Dictyostelium discoideum genome browser database