Comment on ‘Evaluation of the gene-specific dye bias in cDNA microarray experiments’
MEDS and PocR are novel domains with a predicted role in sensing simple hydrocarbon derivatives in prokaryotic signal transduction systems
EGene: a configurable pipeline generation system for automated sequence analysis
LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources
Use of multiple profiles corresponding to a sequence alignment enables effective detection of remote homologues
Convergent Island Statistics: a fast method for determining local alignment score significance
A comprehensive and non-redundant database of protein domain movements
Density guided importance sampling: application to a reduced model of protein folding
Prediction of protein solvent accessibility using fuzzy k-nearest neighbor method
Prediction of protein–protein interactions by combining structure and sequence conservation in protein interfaces
Three-dimensional computation of atom depth in complex molecular structures
Probe rank approaches for gene selection in oligonucleotide arrays with a small number of replicates
A model-based scan statistic for identifying extreme chromosomal regions of gene expression in human tumors
Donuts, scratches and blanks: robust model-based segmentation of microarray images
A stochastic differential equation model for quantifying transcriptional regulatory network in Saccharomyces cerevisiae
Modeling and simulation of cancer immunoprevention vaccine
Differential network expression during drug and stress response
Rapid and selective surveillance of Arabidopsis thaliana genome annotations with Centrifuge
BEST: Binding-site Estimation Suite of Tools
Visualizing profile–profile alignment: pairwise HMM logos
MolIDE: a homology modeling framework you can click with
Meta-DP: domain prediction meta-server
twilight; a Bioconductor package for estimating the local false discovery rate
Stochastic reaction-diffusion simulation with MesoRD
STARS: statistics on inter-atomic distances and torsion angles in protein secondary structures
NodMutDB: a database for genes and mutants involved in symbiosis
EMPReSS: European Mouse Phenotyping Resource for Standardized Screens