Computational cluster validation in post-genomic data analysis
Exon–domain correlation and its corollaries
Functional annotation from predicted protein interaction networks
HYPROSP II-A knowledge-based hybrid method for protein secondary structure prediction based on local prediction confidence
Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map)
Semi-supervised protein classification using cluster kernels
A quantitative determination of multi-protein interactions by the analysis of confocal images using a pixel-by-pixel assessment algorithm
A new progressive-iterative algorithm for multiple structure alignment
Practical FDR-based sample size calculations in microarray experiments
Mining genetic epidemiology data with Bayesian networks I: Bayesian networks and example application (plasma apoE levels)
Inferring protein–protein interactions through high-throughput interaction data from diverse organisms
A latent variable model for chemogenomic profiling
Discovering patterns to extract protein–protein interactions from the literature: Part II
Prediction error estimation: a comparison of resampling methods
CGHAnalyzer: a stand-alone software package for cancer genome analysis using array-based DNA copy number data
SECISDesign: a server to design SECIS-elements within the coding sequence
Statistics of protein library construction
PROVAT: a tool for Voronoi tessellation analysis of protein structures and complexes
COREX/BEST server: a web browser-based program that calculates regional stability variations within protein structures
Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structure
Efficient recognition of folds in protein 3D structures by the improved PRIDE algorithm
MeSHer: identifying biological concepts in microarray assays based on PubMed references and MeSH terms
Resmap: automated representation of macromolecular interfaces as two-dimensional networks
MFAML: a standard data structure for representing and exchanging metabolic flux models