Thermodynamic properties of DNA sequences: characteristic values for the human genome
Efficient sorting of genomic permutations by translocation, inversion and block interchange
Quantifying optimal accuracy of local primary sequence bioinformatics methods
MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons
Prediction of protein–protein interactions using distant conservation of sequence patterns and structure relationships
RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins
Use of extreme patient samples for outcome prediction from gene expression data
Biomarker discovery in microarray gene expression data with Gaussian processes
Statistical analysis of antigen receptor spectratype data
Alignment of metabolic pathways
Refined phylogenetic profiles method for predicting protein–protein interactions
A semantic analysis of the annotations of the human genome
ACT: the Artemis comparison tool
DNA-BAR: distinguisher selection for DNA barcoding
Sarment: Python modules for HMM analysis and partitioning of sequences
MagicMatch—cross-referencing sequence identifiers across databases
Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW
IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
FoldIndex©: a simple tool to predict whether a given protein sequence is intrinsically unfolded
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
IRILmap: linkage map distance correction for intermated recombinant inbred lines/advanced recombinant inbred strains
PhD: a web database application for phenotype data management
PEDSTATS: descriptive statistics, graphics and quality assessment for gene mapping data
BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
MineBlast: a literature presentation service supporting protein annotation by data mining of BLAST results
GeneInfoMiner—a web server for exploring biomedical literature using batch sequence ID
Querying and computing with BioCyc databases
caBIONet—A ˙NET wrapper to access and process genomic data stored at the National Cancer Institute's Center for Bioinformatics databases