Enrichment or depletion of a GO category within a class of genes: which test?
Accurate automated clustering of two-dimensional data for single-nucleotide polymorphism genotyping by a combination of clustering methods: evaluation by large-scale real data
In search of the small ones: improved prediction of short exons in vertebrates, plants, fungi and protists
Inherent limitations in protein–protein docking procedures
ADP_EM: fast exhaustive multi-resolution docking for high-throughput coverage
Robust prediction of consensus secondary structures using averaged base pairing probability matrices
Causality and pathway search in microarray time series experiment
Markers improve clustering of CGH data
Segmentation and intensity estimation of microarray images using a gamma-t mixture model
Clustering threshold gradient descent regularization: with applications to microarray studies
The discovery of transcriptional modules by a two-stage matrix decomposition approach
Parameter estimation using Simulated Annealing for S-system models of biochemical networks
Oligonucleotide microarray identification of Bacillus anthracis strains using support vector machines
MotifScorer: using a compendium of microarrays to identify regulatory motifs
Visualization of genomic aberrations using Affymetrix SNP arrays
AutoGRAPH: an interactive web server for automating and visualizing comparative genome maps
Assembling millions of short DNA sequences using SSAKE
Mclip: motif detection based on cliques of gapped local profile-to-profile alignments
AllerTool: a web server for predicting allergenicity and allergic cross-reactivity in proteins
cBrother: relaxing parental tree assumptions for Bayesian recombination detection
The automation of Nested Clade Phylogeographic Analysis
URec: a system for unrooted reconciliation
QSCOP—SCOP quantified by structural relationships
MinSet: a general approach to derive maximally representative database subsets by using fragment dictionaries and its application to the SCOP database
Exploiting large scale computing to construct high resolution linkage disequilibrium maps of the human genome
msHOT: modifying Hudson's ms simulator to incorporate crossover and gene conversion hotspots
GGtools: analysis of genetics of gene expression in bioconductor
OmicBrowse: a browser of multidimensional omics annotations