Metabolic network properties help assign weights to elementary modes to understand physiological flux distributions
Identifying clusters of functionally related genes in genomes
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
De novo peptide sequencing using ion peak intensity and amino acid cleavage intensity ratio
COBALT: constraint-based alignment tool for multiple protein sequences
Comparative annotation of viral genomes with non-conserved gene structure
A structural alignment kernel for protein structures
Andante: reducing side-chain rotamer search space during comparative modeling using environment-specific substitution probabilities
MSVM-RFE: extensions of SVM-RFE for multiclass gene selection on DNA microarray data
Improving metabolic flux estimation via evolutionary optimization for convex solution space
Clustering by common friends finds locally significant proteins mediating modules
A computational system to select candidate genes for complex human traits
Discovery of microRNA–mRNA modules via population-based probabilistic learning
AMPer: a database and an automated discovery tool for antimicrobial peptides
rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality control
NucPred—Predicting nuclear localization of proteins
FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes
pcaMethods—a bioconductor package providing PCA methods for incomplete data
Codelink: an R package for analysis of GE healthcare gene expression bioarrays
Analyzing microarray data using CLANS
Phylogenetic exploration of bacterial genomic rearrangements
ABCGrid: Application for Bioinformatics Computing Grid
Semantic Web Service provision: a realistic framework for Bioinformatics programmers