Small RNA gene identification and mRNA target predictions in bacteria
Modularity of cellular networks shows general center-periphery polarization
Aggressive assembly of pyrosequencing reads with mates
Poisson approximation for significance in genome-wide ChIP-chip tiling arrays
Identifying molecular markers associated with classification of genotypes by External Logistic Biplots
Faster exact Markovian probability functions for motif occurrences: a DFA-only approach
IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions
Prediction of kinase-specific phosphorylation sites using conditional random fields
Predicting small ligand binding sites in proteins using backbone structure
Integrated search and alignment of protein structures
Reconstructing tumor-wise protein expression in tissue microarray studies using a Bayesian cell mixture model
Cross-hybridization modeling on Affymetrix exon arrays
Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models
Reconstruction of transcriptional dynamics from gene reporter data using differential equations
A new rule-based algorithm for identifying metabolic markers in prostate cancer using tandem mass spectrometry
Osiris: an integrated promoter database for Oryza sativa L.
CARPET: a web-based package for the analysis of ChIP-chip and expression tiling data
BASH: a tool for managing BeadArray spatial artefacts
iMapper: a web application for the automated analysis and mapping of insertional mutagenesis sequence data against Ensembl genomes
Effective cluster-based seed design for cross-species sequence comparisons
SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology
Motif Tool Manager: a web-based framework for motif discovery
AUGIST: inferring species trees while accommodating gene tree uncertainty
PConPy—a Python module for generating 2D protein maps
REJECTOR: software for population history inference from genetic data via a rejection algorithm
SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap
BioCaster: detecting public health rumors with a Web-based text mining system