Structural profiles of human miRNA families from pairwise clustering
Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment
All hits all the time: parameter-free calculation of spaced seed sensitivity
PanCGH: a genotype-calling algorithm for pangenome CGH data
Reference alignment of SNP microarray signals for copy number analysis of tumors
Gene expression trends and protein features effectively complement each other in gene function prediction
A genetic programming-based approach to the classification of multiclass microarray datasets
New evaluation measures for multifactor dimensionality reduction classifiers in gene–gene interaction analysis
Estimation of errors introduced by confocal imaging into the data on segmentation gene expression in Drosophila
A predictive model for identifying mini-regulatory modules in the mouse genome
Simulation of crosstalk between small GTPase RhoA and EGFR-ERK signaling pathway via MEKK1
Glycan family analysis for deducing N-glycan topology from single MS
Precision and recall estimates for two-hybrid screens
Computationally feasible estimation of haplotype frequencies from pooled DNA with and without Hardy–Weinberg equilibrium
Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model
Evaluating contributions of natural language parsers to protein–protein interaction extraction
Matrix correlations for high-dimensional data: the modified RV-coefficient
Better bioinformatics through usability analysis
ProtorP: a protein–protein interaction analysis server
arrayQualityMetrics—a bioconductor package for quality assessment of microarray data
SIMoNe: Statistical Inference for MOdular NEtworks
rHVDM: an R package to predict the activity and targets of a transcription factor