Differential effects of chromatin regulators and transcription factors on gene regulation
Scoring-and-unfolding trimmed tree assembler
Efficient change point detection for genomic sequences of continuous measurements
PE-Assembler
Identifying cancer driver genes in tumor genome sequencing studies
GPU-BLAST
Anatomy of a hash-based long read sequence mapping algorithm for next generation DNA sequencing
MTR
Improving structure alignment-based prediction of SCOP families using Vorolign Kernels
PETcofold
Predicting in vitro drug sensitivity using Random Forests
SLIM
Inference of gene networks—application to Bifidobacterium
Fast and efficient dynamic nested effects models
Evolutionary design principles and functional characteristics based on kingdom-specific network motifs
Prognostic transcriptional association networks
A hybrid approach to extract protein–protein interactions
PriSM
Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization
GimmeMotifs
The uniqueome
Analyzing marginal cases in differential shotgun proteomics
SESAME (SEquence Sorter & AMplicon Explorer)
PLEXY
RSEQtools
Real-world comparison of CPU and GPU implementations of SNPrank
TE Displayer for post-genomic analysis of transposable elements
Accelerating reaction–diffusion simulations with general-purpose graphics processing units