Quantitative trait prediction based on genetic marker-array data, a simulation study
A greedy, graph-based algorithm for the alignment of multiple homologous gene lists
A novel hybrid gene prediction method employing protein multiple sequence alignments
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
A k-mer scheme to predict piRNAs and characterize locust piRNAs
High-accuracy prediction of bacterial type III secreted effectors based on position-specific amino acid composition profiles
Improved side-chain modeling by coupling clash-detection guided iterative search with rotamer relaxation
Computational inference of grammars for larger-than-gene structures from annotated gene sequences
Computational refinement of post-translational modifications predicted from tandem mass spectrometry
Biological assessment of robust noise models in microarray data analysis
Robust linear regression methods in association studies
A method for identifying haplotypes carrying the causative allele in positive natural selection and genome-wide association studies
Identity-by-descent filtering of exome sequence data for disease–gene identification in autosomal recessive disorders
Efficient simulation under a population genetics model of carcinogenesis
Baking a mass-spectrometry data PIE with McMC and simulated annealing
Modular analysis of the probabilistic genetic interaction network
Compression of DNA sequence reads in FASTQ format
Quality control and preprocessing of metagenomic datasets
Bambino
A pipeline for RNA-seq data processing and quality assessment
Identifying dispersed epigenomic domains from ChIP-Seq data
Graphics processing unit implementations of relative expression analysis algorithms enable dramatic computational speedup
GPU accelerated biochemical network simulation
PhyloPro
HTSanalyzeR
SpaCEM3
OrthoNets
The CCPN Metabolomics Project
CNAmet
Dalliance
Automated validation of genetic variants from large databases