Proteins without 3D structure
Correcting errors in short reads by multiple alignments
EpiGPU
Alignment-free detection of local similarity among viral and bacterial genomes
BACOM
Comrad
A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio
Independent surrogate variable analysis to deconvolve confounding factors in large-scale microarray profiling studies
Normalizing bead-based microRNA expression data
Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions
A novel network-based method for measuring the functional relationship between gene sets
Inferring Boolean network structure via correlation
Prediction of metabolic reactions based on atomic and molecular properties of small-molecule compounds
Comprehensive and relaxed search for oligonucleotide signatures in hierarchically clustered sequence datasets
Multi-platform segmentation for joint detection of copy number variants
Reasoning with bio-ontologies
DIME
Bismark
CMView
ProDy
CytoModeler
MRSD
Reliability-Oriented bioinformatic networks visualization
datPAV—an online processing, analysis and visualization tool for exploratory investigation of experimental data
CyClus3D
VIZ-GRAIL
Systems biology model repository for macrophage pathway simulation