PathScan
Improved similarity scores for comparing motifs
Genome annotation test with validation on transcription start site and ChIP-Seq for Pol-II binding data
Mixture models for analysis of the taxonomic composition of metagenomes
MAISTAS
A reference dataset for the analyses of membrane protein secondary structures and transmembrane residues using circular dichroism spectroscopy
Identification and quantification of metabolites in 1H NMR spectra by Bayesian model selection
Exploiting prior knowledge and gene distances in the analysis of tumor expression profiles with extended Hidden Markov Models
DREME
An optimal peak alignment for comprehensive two-dimensional gas chromatography mass spectrometry using mixture similarity measure
Pathway analysis of high-throughput biological data within a Bayesian network framework
Multiple-rule bias in the comparison of classification rules
PLIO
BamTools
SMETHILLIUM
MEME-ChIP
Clonality
OTUbase
KalignP
FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes
Boulder ALignment Editor (ALE)
FusionHunter
A graphical interface for the FoldX forcefield
Grid computing for improving conformational sampling in NMR structure calculation
APOLLO
Mcheza
Services for prediction of drug susceptibility for HIV proteases and reverse transcriptases at the HIV drug research centre
RuleBender
Figure summarizer browser extensions for PubMed Central
Cobweb
PONDEROSA, an automated 3D-NOESY peak picking program, enables automated protein structure determination
Rgtsp
ReMark
‘Sciencenet’—towards a global search and share engine for all scientific knowledge
Signaling gateway molecule pages—a data model perspective
Molecular signatures database (MSigDB) 3.0