Inferring statin-induced gene regulatory relationships in primary human hepatocytes
Discovering novel subsystems using comparative genomics
RNAG: a new Gibbs sampler for predicting RNA secondary structure for unaligned sequences
Identification of novel phosphorylation modification sites in human proteins that originated after the human–chimpanzee divergence
SEED: efficient clustering of next-generation sequences
A dynamic programming algorithm for identification of triplex-forming sequences
Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)
Structural analysis of the hot spots in the binding between H1N1 HA and the 2D1 antibody: do mutations of H1N1 from 1918 to 2009 affect much on this binding?
Alignment of distantly related protein structures: algorithm, bound and implications to homology modeling
Stage prediction of embryonic stem cell differentiation from genome-wide expression data
Bayesian prediction of tissue-regulated splicing using RNA sequence and cellular context
Estimating classification probabilities in high-dimensional diagnostic studies
A powerful approach for association analysis incorporating imprinting effects
Identifying disease-associated SNP clusters via contiguous outlier detection
Integration of gene normalization stages and co-reference resolution using a Markov logic network
VISTA Region Viewer (RViewer)—a computational system for prioritizing genomic intervals for biomedical studies
RseqFlow: workflows for RNA-Seq data analysis
ContEst: estimating cross-contamination of human samples in next-generation sequencing data
phyloMeta : a program for phylogenetic comparative analyses with meta-analysis
PDBpaint, a visualization webservice to tag protein structures with sequence annotations
CAM-CM: a signal deconvolution tool for in vivo dynamic contrast-enhanced imaging of complex tissues
GenSSI: a software toolbox for structural identifiability analysis of biological models
GaggleBridge : collaborative data analysis
miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants
Dasty3, a WEB framework for DAS
CalcTav —integration of a spreadsheet and Taverna workbench