A deeper look into transcription regulatory code by preferred pair distance templates for transcription factor binding sites
coMOTIF
FDM
Tree-structured algorithm for long weak motif discovery
Exome sequencing-based copy-number variation and loss of heterozygosity detection
A phylogenetic mixture model for the identification of functionally divergent protein residues
Reconstructing the architecture of the ancestral amniote genome
A powerful and flexible approach to the analysis of RNA sequence count data
Penalized regression elucidates aberration hotspots mediating subtype-specific transcriptional responses in breast cancer
Large-scale dynamic gene regulatory network inference combining differential equation models with local dynamic Bayesian network analysis
Inferring disease and gene set associations with rank coherence in networks
Robust synthetic gene network design via library-based search method
Contextual analysis of RNAi-based functional screens using interaction networks
Automatic detection of changes in the dynamics of delayed stochastic gene networks and in vivo production of RNA molecules in Escherichia coli
OrganismTagger
Automatic extraction of angiogenesis bioprocess from text
A biclustering algorithm for extracting bit-patterns from binary datasets
A framework for analytical characterization of monoclonal antibodies based on reactivity profiles in different tissues
Gee Fu
Mauve Assembly Metrics
ReplacementMatrix
JMassBalance
METANNOGEN
GlobalMIT
NetDS
The GNAT library for local and remote gene mention normalization
NeuroPedia