cSSMD
Identifying associations between amino acid changes and meta information in alignments
Comparative analysis of algorithms for next-generation sequencing read alignment
PTPan—overcoming memory limitations in oligonucleotide string matching for primer/probe design
SiTaR
SCLpred
Spatial clustering of protein binding sites for template based protein docking
Feature-based 3D motif filtering for ribosomal RNA
PepCrawler
iMod
Conserved and differential gene interactions in dynamical biological systems
The use of semiparametric mixed models to analyze PamChip® peptide array data
Improved quality control processing of peptide-centric LC-MS proteomics data
Reconstructing transcription factor activities in hierarchical transcription network motifs
Integration of SNP genotyping confidence scores in IBD inference
Robustness portraits of diverse biological networks conserved despite order-of-magnitude parameter uncertainty
Simultaneous recognition and segmentation of cells
ChimeraScan
Absynte
Extending KNIME for next-generation sequencing data analysis
SPREAD
Fast and accurate prediction of protein side-chain conformations
COCOMAPS
Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA
Detecting biological network organization and functional gene orthologs
SDRS—an algorithm for analyzing large-scale dose–response data
AluHunter