Computational prediction of eukaryotic phosphorylation sites
An empirical comparison of several recent epistatic interaction detection methods
Population length variability and nucleoid numbers in Escherichia coli
Finding recurrent copy number alterations preserving within-sample homogeneity
FLASH: fast length adjustment of short reads to improve genome assemblies
Bambus 2: scaffolding metagenomes
Correlated evolution of transcription factors and their binding sites
Robust relative compression of genomes with random access
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
Finding stable local optimal RNA secondary structures
Protein–protein binding affinity prediction on a diverse set of structures
SpliceTrap: a method to quantify alternative splicing under single cellular conditions
Semi-supervised learning improves gene expression-based prediction of cancer recurrence
Revisiting the negative example sampling problem for predicting protein–protein interactions
Sparse non-negative generalized PCA with applications to metabolomics
Gaussian interaction profile kernels for predicting drug–target interaction
Comparing bioassay response and similarity ensemble approaches to probing protein pharmacology
AUC-based biomarker ensemble with an application on gene scores predicting low bone mineral density
High-dimensional bolstered error estimation
HIV Therapy Simulator: a graphical user interface for comparing the effectiveness of novel therapy regimens
TopiaryExplorer: visualizing large phylogenetic trees with environmental metadata
adegenet 1.3-1 : new tools for the analysis of genome-wide SNP data
MapReduce implementation of a hybrid spectral library-database search method for large-scale peptide identification
Metavir: a web server dedicated to virome analysis
wapRNA: a web-based application for the processing of RNA sequences