The evolution of nitrogen fixation in cyanobacteria
An effective statistical evaluation of ChIPseq dataset similarity
PHACTS, a computational approach to classifying the lifestyle of phages
Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS
Transformations for the compression of FASTQ quality scores of next-generation sequencing data
Evaluating bacterial gene-finding HMM structures as probabilistic logic programs
SNP calling using genotype model selection on high-throughput sequencing data
Application of canonical correlation analysis for identifying viral integration preferences
Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts
Predicting folding free energy changes upon single point mutations
Interactome–transcriptome integration for predicting distant metastasis in breast cancer
SSuMMo
influx_s
Modeling community-wide molecular networks of multicellular systems
De novo motif discovery facilitates identification of interactions between transcription factors in Saccharomyces cerevisiae
Mining and evaluation of molecular relationships in literature
Roundup 2.0
CHROMATRA
A scalable and portable framework for massively parallel variable selection in genetic association studies
FX
AnnTools
nEASE
IMA
StochSens—matlab package for sensitivity analysis of stochastic chemical systems
NetSeed
MetExtract
Mining and integration of pathway diagrams from imaging data
medpie
COPICAT
IMID
BESC knowledgebase public portal†
GROMACS molecule & liquid database