Bioimage informatics
Defining and providing robust controls for microRNA prediction
Signal analysis for genome-wide maps of histone modifications measured by ChIP-seq
YOABS
High-quality sequence clustering guided by network topology and multiple alignment likelihood
Oases
Rchange
Allele-specific expression analysis methods for high-density SNP microarray data
A new statistical approach to detecting differentially methylated loci for case control Illumina array methylation data
Causal reasoning on biological networks
Deriving transcriptional programs and functional processes from gene expression databases
An integrated strategy for prediction uncertainty analysis
A Bayesian approach to targeted experiment design
WHIDE—a web tool for visual data mining colocation patterns in multivariate bioimages
Combining multiple approaches for gene microarray classification
A method of finding optimal weight factors for compound identification in gas chromatography–mass spectrometry
GMD
Unipro UGENE
PERMORY-MPI
HandAlign
SiteComp
Rapid identification of non-human sequences in high-throughput sequencing datasets
rehh
CentiLib
SED-ED, a workflow editor for computational biology experiments written in SED-ML
R/DWD
RNA-Seq Atlas—a reference database for gene expression profiling in normal tissue by next-generation sequencing
GENI-DB
BioQ