Bacterial GRAS domain proteins throw new light on gibberellic acid response mechanisms
MolBioLib: a C++11 framework for rapid development and deployment of bioinformatics tasks
YAHA: fast and flexible long-read alignment with optimal breakpoint detection
TMBB-DB: a transmembrane β-barrel proteome database
Measuring and comparing structural fluctuation patterns in large protein datasets
Contact map prediction using a large-scale ensemble of rule sets and the fusion of multiple predicted structural features
Deep architectures for protein contact map prediction
Identifying multi-layer gene regulatory modules from multi-dimensional genomic data
Ancestral haplotype-based association mapping with generalized linear mixed models accounting for stratification
Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks
iBBiG: iterative binary bi-clustering of gene sets
Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data
Bayesian ontology querying for accurate and noise-tolerant semantic searches
UniMoG—a unifying framework for genomic distance calculation and sorting based on DCJ
VegaMC: a R/bioconductor package for fast downstream analysis of large array comparative genomic hybridization datasets
GeneTalk: an expert exchange platform for assessing rare sequence variants in personal genomes
Nebula—a web-server for advanced ChIP-seq data analysis
Snakemake—a scalable bioinformatics workflow engine
RILogo: visualizing RNA–RNA interactions
DELIMINATE—a fast and efficient method for loss-less compression of genomic sequences
Folding RNA/DNA hybrid duplexes
easyRNASeq: a bioconductor package for processing RNA-Seq data
An R package suite for microarray meta-analysis in quality control, differentially expressed gene analysis and pathway enrichment detection
GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update
Estimation of pleiotropy between complex diseases using single-nucleotide polymorphism-derived genomic relationships and restricted maximum likelihood
zCall: a rare variant caller for array-based genotyping
A MATLAB toolbox for structural kinetic modeling
SQID-XLink: implementation of an intensity-incorporated algorithm for cross-linked peptide identification
RedoxDB—a curated database for experimentally verified protein oxidative modification
GlycoCD: a repository for carbohydrate-related CD antigens
Paving the future: finding suitable ISMB venues
NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species