Genome Fusion Detection: a novel method to detect fusion genes from SNP-array data
PreDNA: accurate prediction of DNA-binding sites in proteins by integrating sequence and geometric structure information
Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights
Bayesian analysis of gene essentiality based on sequencing of transposon insertion libraries
Oxfold: kinetic folding of RNA using stochastic context-free grammars and evolutionary information
NucleoFinder: a statistical approach for the detection of nucleosome positions
Comparative study of RNA-seq- and Microarray-derived coexpression networks in Arabidopsis thaliana
Bayesian parentage analysis with systematic accountability of genotyping error, missing data and false matching
BioGranat-IG: a network analysis tool to suggest mechanisms of genetic heterogeneity from exome-sequencing data
Improving the reuse of computational models through version control
Composition and abstraction of logical regulatory modules: application to multicellular systems
Drug-SNPing: an integrated drug-based, protein interaction-based tagSNP-based pharmacogenomics platform for SNP genotyping
Inferring microRNA–mRNA causal regulatory relationships from expression data
Extracting 3D cell parameters from dense tissue environments: application to the development of the mouse heart
A new algorithm for context-based biomedical diagram similarity estimation
Fragment recruitment on metabolic pathways: comparative metabolic profiling of metagenomes and metatranscriptomes
RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads
displayHTS: a R package for displaying data and results from high-throughput screening experiments
ScalaBLAST 2.0: rapid and robust BLAST calculations on multiprocessor systems
AbCD: arbitrary coverage design for sequencing-based genetic studies
essaMEM: finding maximal exact matches using enhanced sparse suffix arrays
BION web server: predicting non-specifically bound surface ions
SwarmDock: a server for flexible protein–protein docking
RNA-eXpress annotates novel transcript features in RNA-seq data
mRNAStab—a web application for mRNA stability analysis
MetaNetX.org : a website and repository for accessing, analysing and manipulating metabolic networks
TACTICS, an interactive platform for customized high-content bioimaging analysis
Network inference using steady-state data and Goldbeter–Koshland kinetics