Tiki, at the head of a new superfamily of enzymes
Exploring the role of human miRNAs in virus–host interactions using systematic overlap analysis
Modeling nucleosome position distributions from experimental nucleosome positioning maps
Kinannote, a computer program to identify and classify members of the eukaryotic protein kinase superfamily
Distilled single-cell genome sequencing and de novo assembly for sparse microbial communities
Indel and Carryforward Correction (ICC): a new analysis approach for processing 454 pyrosequencing data
ROBNCA: robust network component analysis for recovering transcription factor activities
Assessing association between protein truncating variants and quantitative traits
Joint haplotype phasing and genotype calling of multiple individuals using haplotype informative reads
PhosphoChain: a novel algorithm to predict kinase and phosphatase networks from high-throughput expression data
Statistical agglomeration: peak summarization for direct infusion lipidomics
MeltDB 2.0–advances of the metabolomics software system
A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs
Graph-based peak alignment algorithms for multiple liquid chromatography-mass spectrometry datasets
MIG: Multi-Image Genome viewer
Twist-DNA: computing base-pair and bubble opening probabilities in genomic superhelical DNA
OncoSNP-SEQ: a statistical approach for the identification of somatic copy number alterations from next-generation sequencing of cancer genomes
ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq
nhmmer: DNA homology search with profile HMMs
RACER: Rapid and accurate correction of errors in reads
SW#–GPU-enabled exact alignments on genome scale
SAPA tool: finding protein regions by combination of amino acid composition, scaled profiles, patterns and rules
DRAW+SneakPeek: Analysis workflow and quality metric management for DNA-seq experiments
deltaGseg: macrostate estimation via molecular dynamics simulations and multiscale time series analysis
SICOP : identifying significant co-interaction patterns
GALANT: a Cytoscape plugin for visualizing data as functional landscapes projected onto biological networks
SPNConverter: a new link between static and dynamic complex network analysis
SubNet: a Java application for subnetwork extraction
CoDNaS: a database of conformational diversity in the native state of proteins
BLAD: A comprehensive database of widely circulated beta-lactamases
mpMoRFsDB: a database of molecular recognition features in membrane proteins
TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors