isomiRID: a framework to identify microRNA isoforms
Analysis of base-pairing probabilities of RNA molecules involved in protein–RNA interactions
MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples
Oncofuse: a computational framework for the prediction of the oncogenic potential of gene fusions
Inferring nucleosome positions with their histone mark annotation from ChIP data
A distance-based test of association between paired heterogeneous genomic data
Accurate identification of polyadenylation sites from 3′ end deep sequencing using a naïve Bayes classifier
Genome compression: a novel approach for large collections
High-accuracy prediction of transmembrane inter-helix contacts and application to GPCR 3D structure modeling
Protein–ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment
Identification of active transcription factor and miRNA regulatory pathways in Alzheimer's disease
A Turing test for artificial expression data
Bayesian consensus clustering
Novel human lncRNA–disease association inference based on lncRNA expression profiles
Near-optimal experimental design for model selection in systems biology
Incorporating prior knowledge into Gene Network Study
SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes
PARSEC: PAtteRn SEarch and Contextualization
MLML: consistent simultaneous estimates of DNA methylation and hydroxymethylation
Pclust: protein network visualization highlighting experimental data
WebRASP: a server for computing energy scores to assess the accuracy and stability of RNA 3D structures
omiRas: a Web server for differential expression analysis of miRNAs derived from small RNA-Seq data
nCal: an R package for non-linear calibration
Scaffold network generator: a tool for mining molecular structures
targetHub: a programmable interface for miRNA–gene interactions
The BioPAX Validator
CellMissy: a tool for management, storage and analysis of cell migration data produced in wound healing-like assays
On representative and illustrative comparisons with real data in bioinformatics: response to the letter to the editor by Smith et al.
Corrigendum of ‘High throughput analysis of epistasis in genome-wide association studies with BiForce’