Using Genome Query Language to uncover genetic variation
Specificity control for read alignments using an artificial reference genome-guided false discovery rate
Further Steps in TANGO: improved taxonomic assignment in metagenomics
Adaptive reference-free compression of sequence quality scores
Informed and automated k -mer size selection for genome assembly
A poor man’s BLASTX—high-throughput metagenomic protein database search using PAUDA
De no vo finished 2.8 Mbp Staphylococcus aureus genome assembly from 100 bp short and long range paired-end reads
EXPANDS: expanding ploidy and allele frequency on nested subpopulations
Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure
Cascleave 2.0, a new approach for predicting caspase and granzyme cleavage targets
Functional module identification in protein interaction networks by interaction patterns
Inferring the soybean ( Glycine max ) microRNA functional network based on target gene network
A user-oriented web crawler for selectively acquiring online content in e-health research
snoStrip: a snoRNA annotation pipeline
MFCompress: a compression tool for FASTA and multi-FASTA data
SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop
Sequence alignment visualization in HTML5 without Java
Phylowood: interactive web-based animations of biogeographic and phylogeographic histories
AnchorMS: a bioinformatics tool to derive structural information from the mass spectra of cross-linked protein complexes
gCMAP: user-friendly connectivity mapping with R
A C library for retrieving specific reactions from the BioModels database
BooleSim: an interactive Boolean network simulator
MSPrep—Summarization, normalization and diagnostics for processing of mass spectrometry–based metabolomic data
BEReX: Biomedical Entity-Relationship eXplorer
StochDecomp—Matlab package for noise decomposition in stochastic biochemical systems
Pattern search in BioPAX models
PhosphoNetworks: a database for human phosphorylation networks
ISCB: past–present perspective for the International Society for Computational Biology
ISCB/SPRINGER series in computational biology
The International Society of Computational Biology presents: the Great Lakes Bioinformatics Conference, May 16–18, 2014, Cincinnati, Ohio