Thymine distribution in genes provides novel insight into the functional significance of the proteome of the malaria parasite Plasmodium falciparum 3D7
Robust adjustment of sequence tag abundance
GIIRA—RNA-Seq driven gene finding incorporating ambiguous reads
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
A probabilistic approach to explore human miRNA targetome by integrating miRNA-overexpression data and sequence information
Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets
A penalized Bayesian approach to predicting sparse protein–DNA binding landscapes
ORMAN: Optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms
Discretized Gaussian mixture for genotyping of microsatellite loci containing homopolymer runs
FFAS-3D: improving fold recognition by including optimized structural features and template re-ranking
SecStAnT: secondary structure analysis tool for data selection, statistics and models building
Decoy-free protein-level false discovery rate estimation
MMAD: microarray microdissection with analysis of differences is a computational tool for deconvoluting cell type-specific contributions from tissue samples
Two novel pathway analysis methods based on a hierarchical model
ATHENA: the analysis tool for heritable and environmental network associations
Frequent glycan structure mining of influenza virus data revealed a sulfated glycan motif that increased viral infection
Exploring high dimensional data with Butterfly: a novel classification algorithm based on discrete dynamical systems
Mouse model phenotypes provide information about human drug targets
Automated prior knowledge-based quantification of neuronal patterns in the spinal cord of zebrafish
orthAgogue: an agile tool for the rapid prediction of orthology relations
iPEAP: integrating multiple omics and genetic data for pathway enrichment analysis
The semantic measures library and toolkit: fast computation of semantic similarity and relatedness using biomedical ontologies
Comment on ‘Bayesian parentage analysis with systematic accountability of genotyping error, missing data and false matching’