Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data
AbsCN-seq: a statistical method to estimate tumor purity, ploidy and absolute copy numbers from next-generation sequencing data
Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads
Bias from removing read duplication in ultra-deep sequencing experiments
SigHunt: horizontal gene transfer finder optimized for eukaryotic genomes
D-Tailor: automated analysis and design of DNA sequences
Correlations between predicted protein disorder and post-translational modifications in plants
Inference with viral quasispecies diversity indices: clonal and NGS approaches
SNPdryad: predicting deleterious non-synonymous human SNPs using only orthologous protein sequences
Allerdictor: fast allergen prediction using text classification techniques
Optimization strategies for fast detection of positive selection on phylogenetic trees
Improving computational efficiency and tractability of protein design using a piecemeal approach. A strategy for parallel and distributed protein design
Estimation of fluorescence-tagged RNA numbers from spot intensities
Integrative analysis of histone ChIP-seq and transcription data using Bayesian mixture models
Prediction of therapeutic microRNA based on the human metabolic network
ALEA: a toolbox for allele-specific epigenomics analysis
FamAnn: an automated variant annotation pipeline to facilitate target discovery for family-based sequencing studies
Regional heritability advanced complex trait analysis for GPU and traditional parallel architectures
CasOT: a genome-wide Cas9/gRNA off-target searching tool
CAGExploreR: an R package for the analysis and visualization of promoter dynamics across multiple experiments
QCGWAS: A flexible R package for automated quality control of genome-wide association results
DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data
CMGRN: a web server for constructing multilevel gene regulatory networks using ChIP-seq and gene expression data