Challenges in RNA virus bioinformatics
Tospovirus ambisense genomic RNA segments use almost complete repertoire of stable tetraloops in the intergenic region
Accurate computational prediction of the transcribed strand of CRISPR non-coding RNAs
DMAP: differential methylation analysis package for RRBS and WGBS data
Estimating optimal window size for analysis of low-coverage next-generation sequence data
A gradient-boosting approach for filtering de novo mutations in parent–offspring trios
Lacking alignments? The next-generation sequencing mapper segemehl revisited
PyRAD: assembly of de novo RADseq loci for phylogenetic analyses
Protein fold recognition using geometric kernel data fusion
A personalized committee classification approach to improving prediction of breast cancer metastasis
Probabilistic PCA of censored data: accounting for uncertainties in the visualization of high-throughput single-cell qPCR data
FISH: fast and accurate diploid genotype imputation via segmental hidden Markov model
Induction of T-cell memory by a dendritic cell vaccine: a computational model
Derivative processes for modelling metabolic fluxes
Characterization of p38 MAPK isoforms for drug resistance study using systems biology approach
An adaptive workflow coupled with Random Forest algorithm to identify intact N-glycopeptides detected from mass spectrometry
Wrangling Galaxy's reference data
The Biological Reference Repository (BioR): a rapid and flexible system for genomics annotation
LASAGNA-Search 2.0: integrated transcription factor binding site search and visualization in a browser
The Bio-Community Perl toolkit for microbial ecology
Orione, a web-based framework for NGS analysis in microbiology
pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires
Genome-wide quantitative analysis of DNA methylation from bisulfite sequencing data
Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design
An R package to analyse LC/MS metabolomic data: MAIT (Metabolite Automatic Identification Toolkit)
FSuite: exploiting inbreeding in dense SNP chip and exome data
Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming