Piecewise-constant and low-rank approximation for identification of recurrent copy number variations
Turtle: Identifying frequent k -mers with cache-efficient algorithms
Improved transcript isoform discovery using ORF graphs
Improving MEME via a two-tiered significance analysis
Motifs tree: a new method for predicting post-translational modifications
GAP: towards almost 100 percent prediction for β-strand-mediated aggregating peptides with distinct morphologies
Fast alignment-free sequence comparison using spaced-word frequencies
kmacs: the k -mismatch average common substring approach to alignment-free sequence comparison
Basin Hopping Graph: a computational framework to characterize RNA folding landscapes
A general method for accurate estimation of false discovery rates in identification of differentially expressed genes
Assessing multivariate gene-metabolome associations with rare variants using Bayesian reduced rank regression
TroX: a new method to learn about the genesis of aneuploidy from trisomic products of conception
Optimal metabolic route search based on atom mappings
Prediction of individualized therapeutic vulnerabilities in cancer from genomic profiles
flowFit: a Bioconductor package to estimate proliferation in cell-tracking dye studies
comTAR: a web tool for the prediction and characterization of conserved microRNA targets in plants
Prokka: rapid prokaryotic genome annotation
KAnalyze: a fast versatile pipelined K-mer toolkit
CorMut: an R/Bioconductor package for computing correlated mutations based on selection pressure
VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants
tqDist: a library for computing the quartet and triplet distances between binary or general trees
molBLOCKS: decomposing small molecule sets and uncovering enriched fragments
massiR : a method for predicting the sex of samples in gene expression microarray datasets
SECA: SNP effect concordance analysis using genome-wide association summary results
Beyond the proteome: Mass Spectrometry Special Interest Group (MS-SIG) at ISMB/ECCB 2013
The automated function prediction SIG looks back at 2013 and prepares for 2014