Herpesviral helicase-primase subunit UL8 is inactivated B-family polymerase
Covariate-modulated local false discovery rate for genome-wide association studies
Filling annotation gaps in yeast genomes using genome-wide contact maps
Trimmomatic: a flexible trimmer for Illumina sequence data
Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity
Lossy compression of quality scores in genomic data
Computational identification of natural peptides based on analysis of molecular evolution
A comprehensive comparison of association estimators for gene network inference algorithms
CABS-flex predictions of protein flexibility compared with NMR ensembles
Normalization of metabolomics data with applications to correlation maps
A change-point model for identifying 3′UTR switching by next-generation RNA sequencing
A fast and powerful tree-based association test for detecting complex joint effects in case–control studies
Association analysis using next-generation sequence data from publicly available control groups: the robust variance score statistic
Inferring rare disease risk variants based on exact probabilities of sharing by multiple affected relatives
Direct calculation of elementary flux modes satisfying several biological constraints in genome-scale metabolic networks
Rgb: a scriptable genome browser for R
methylC Track: visual integration of single-base resolution DNA methylation data on the WashU EpiGenome Browser
Census 2: isobaric labeling data analysis
Codon Optimization OnLine (COOL): a web-based multi-objective optimization platform for synthetic gene design
DSRC 2—Industry-oriented compression of FASTQ files
geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees
relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data
ProQM-resample: improved model quality assessment for membrane proteins by limited conformational sampling
PRADA: pipeline for RNA sequencing data analysis
SVAMP: sequence variation analysis, maps and phylogeny
HyperModules: identifying clinically and phenotypically significant network modules with disease mutations for biomarker discovery
rTANDEM, an R/Bioconductor package for MS/MS protein identification
GOssTo: a stand-alone application and a web tool for calculating semantic similarities on the Gene Ontology
OncomiRDB: a database for the experimentally verified oncogenic and tumor-suppressive microRNAs
MetDisease—connecting metabolites to diseases via literature
Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic