METAINTER: meta-analysis of multiple regression models in genome-wide association studies
A two-stage statistical procedure for feature selection and comparison in functional analysis of metagenomes
HTSeq—a Python framework to work with high-throughput sequencing data
Sigma: Strain-level inference of genomes from metagenomic analysis for biosurveillance
LongTarget: a tool to predict lncRNA DNA-binding motifs and binding sites via Hoogsteen base-pairing analysis
Consensus Genotyper for Exome Sequencing (CGES): improving the quality of exome variant genotypes
Proteomic analysis and prediction of human phosphorylation sites in subcellular level reveal subcellular specificity
Comprehensive large-scale assessment of intrinsic protein disorder
Hybrid Bayesian-rank integration approach improves the predictive power of genomic dataset aggregation
Translating bioinformatics in oncology: guilt-by-profiling analysis and identification of KIF18B and CDCA3 as novel driver genes in carcinogenesis
GLAD: a mixed-membership model for heterogeneous tumor subtype classification
PROPER: comprehensive power evaluation for differential expression using RNA-seq
EUROCarbDB(CCRC): a EUROCarbDB node for storing glycomics standard data
ExportAid: database of RNA elements regulating nuclear RNA export in mammals
Curation, integration and visualization of bacterial virulence factors in PATRIC
EasyStrata: evaluation and visualization of stratified genome-wide association meta-analysis data
PINBPA: Cytoscape app for network analysis of GWAS data
BioVLAB-MMIA-NGS: microRNA–mRNA integrated analysis using high-throughput sequencing data
A Python package for parsing, validating, mapping and formatting sequence variants using HGVS nomenclature
PFP/ESG: automated protein function prediction servers enhanced with Gene Ontology visualization tool
switchBox: an R package for k–Top Scoring Pairs classifier development
Enlight: web-based integration of GWAS results with biological annotations
NAIL, a software toolset for inferring, analyzing and visualizing regulatory networks
Rcpi: R/Bioconductor package to generate various descriptors of proteins, compounds and their interactions
Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking
PhaseTank: genome-wide computational identification of phasiRNAs and their regulatory cascades
KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring
MTide: an integrated tool for the identification of miRNA–target interaction in plants
PHI-DAC: protein homology database through dihedral angle conservation
PIP-DB: the Protein Isoelectric Point database
Summary of the BioLINK SIG 2013 meeting at ISMB/ECCB 2013
The Bioinformatics Open Source Conference (BOSC) 2013