Understanding the fabric of protein crystals : computational classification of biological interfaces and crystal contacts
GERV : a statistical method for generative evaluation of regulatory variants for transcription factor binding
Graphical pan-genome analysis with compressed suffix trees and the Burrows–Wheeler transform
Detecting dispersed duplications in high-throughput sequencing data using a database-free approach
Gapped sequence alignment using artificial neural networks : application to the MHC class I system
The minimum evolution problem is hard : a link between tree inference and graph clustering problems
MT-HESS : an efficient Bayesian approach for simultaneous association detection in OMICS datasets, with application to eQTL mapping in multiple tissues
EMDomics : a robust and powerful method for the identification of genes differentially expressed between heterogeneous classes
GenoWAP : GWAS signal prioritization through integrated analysis of genomic functional annotation
ancGWAS : a post genome-wide association study method for interaction, pathway and ancestry analysis in homogeneous and admixed populations
SeqSIMLA2_exact : simulate multiple disease sites in large pedigrees with given disease status for diseases with low prevalence
An algorithm to detect and communicate the differences in computational models describing biological systems
PPIXpress : construction of condition-specific protein interaction networks based on transcript expression
PDID : database of molecular-level putative protein–drug interactions in the structural human proteome
LOLA : enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor
BGT : efficient and flexible genotype query across many samples
funtooNorm : an R package for normalization of DNA methylation data when there are multiple cell or tissue types
PRIMUS : improving pedigree reconstruction using mitochondrial and Y haplotypes
ParTIES : a toolbox for Paramecium interspersed DNA elimination studies
Protael : protein data visualization library for the web
MaxBin 2.0 : an automated binning algorithm to recover genomes from multiple metagenomic datasets
SylvX : a viewer for phylogenetic tree reconciliations
NMRe : a web server for NMR protein structure refinement with high-quality structure validation scores
DelPhiPKa web server : predicting pK a of proteins, RNAs and DNAs
DARA : a web server for rapid search of structural neighbours using solution small angle X-ray scattering data
Omokage search : shape similarity search service for biomolecular structures in both the PDB and EMDB
IsoMIF Finder : online detection of binding site molecular interaction field similarities
RVFam : an R package for rare variant association analysis with family data
tcsBU : a tool to extend TCS network layout and visualization
Pycellerator : an arrow-based reaction-like modelling language for biological simulations
caRpools : an R package for exploratory data analysis and documentation of pooled CRISPR/Cas9 screens
Web-based Gene Pathogenicity Analysis (WGPA) : a web platform to interpret gene pathogenicity from personal genome data
openBIS ELN-LIMS : an open-source database for academic laboratories