densityCut
DOGMA
Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads
SoFIA
A simple yet accurate correction for winner's curse can predict signals discovered in much larger genome scans
seqlm
A two-part mixed-effects model for analyzing longitudinal microbiome compositional data
PERMANOVA-S
ProbFold
Benchmarking the next generation of homology inference tools
Confidence assignment for mass spectrometry based peptide identifications via the extreme value distribution
Calculating and scoring high quality multiple flexible protein structure alignments
RCP
Drug repositioning based on comprehensive similarity measures and Bi-Random walk algorithm
A computational model to predict the immune system activation by citrus-derived vaccine adjuvants
Computational discovery and in vivo validation of hnf4 as a regulatory gene in planarian regeneration
Bioinformatics programs are 31-fold over-represented among the highest impact scientific papers of the past two decades
FastHiC
BRAT-nova
BAM-matcher
OrfM
SimLoRD
SA-SSR
PRESS
DyNet
XLinkDB 2.0
ProbOnto
Tools4miRs – one place to gather all the tools for miRNA analysis
TOPDOM
4DGenome
ECCB 2016
ECCB 2016 ORGANIZATION
Estimating real cell size distribution from cross-section microscopy imaging
Higher order methylation features for clustering and prediction in epigenomic studies
TANDEM
Complementary feature selection from alternative splicing events and gene expression for phenotype prediction
Combining dependent P-values with an empirical adaptation of Brown’s method
Causality modeling for directed disease network
Simultaneous discovery of cancer subtypes and subtype features by molecular data integration
Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization
Mutual enrichment in aggregated ranked lists with applications to gene expression regulation
The Network Library
GTRAC
PanTools
Information-optimal genome assembly via sparse read-overlap graphs
A program for verification of phylogenetic network models
LuxGLM
Assemble CRISPRs from metagenomic sequencing data
Improve homology search sensitivity of PacBio data by correcting frameshifts
Fast genotyping of known SNPs through approximate k-mer matching
CoLoRMap
Optimization of signal-to-noise ratio for efficient microarray probe design
Extending partial haplotypes to full genome haplotypes using chromosome conformation capture data
MetaProb
Characterizing leader sequences of CRISPR loci
Pathway-based approach using hierarchical components of collapsed rare variants
Detecting horizontal gene transfer by mapping sequencing reads across species boundaries
A unified model based multifactor dimensionality reduction framework for detecting gene–gene interactions
Gene-set association tests for next-generation sequencing data
XGSA
PeakXus
DeepChrome
Snowball
ModuleAlign
PRED-TMBB2
AUCpreD
SWORD—a highly efficient protein database search
Patterns of amino acid conservation in human and animal immunodeficiency viruses
PEPSI-Dock
Simulated linear test applied to quantitative proteomics
A probabilistic model for detecting rigid domains in protein structures
L 1 regularization facilitates detection of cell type-specific parameters in dynamical systems
Large-scale inference of conjunctive Bayesian networks
A weighted exact test for mutually exclusive mutations in cancer
Genome wide predictions of miRNA regulation by transcription factors
iReMet-flux
Edge-based sensitivity analysis of signaling networks by using Boolean dynamics
Logical model specification aided by model-checking techniques
Bayesian parameter estimation for the Wnt pathway
On cross-conditional and fluctuation correlations in competitive RNA networks
Author Index