FastRFS: fast and accurate Robinson-Foulds Supertrees using constrained exact optimization
Xenolog classification
A pipeline for local assembly of minisatellite alleles from single-molecule sequencing data
Statistical significance based on length and position of the local score in a model of i.i.d. sequences
ESA-UbiSite: accurate prediction of human ubiquitination sites by identifying a set of effective negatives
Accelerating Bayesian inference for evolutionary biology models
LRFragLib: an effective algorithm to identify fragments for de novo protein structure prediction
Improving protein disorder prediction by deep bidirectional long short-term memory recurrent neural networks
A novel non-parametric method for uncertainty evaluation of correlation-based molecular signatures: its application on PAM50 algorithm
Network-based analysis of omics data: the LEAN method
Smoldyn: particle-based simulation with rule-based modeling, improved molecular interaction and a library interface
Robust parameter estimation for dynamical systems from outlier-corrupted data
Agent-based re-engineering of ErbB signaling: a modeling pipeline for integrative systems biology
A novel approach based on KATZ measure to predict associations of human microbiota with non-infectious diseases
ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data
SINE_scan: an efficient tool to discover short interspersed nuclear elements (SINEs) in large-scale genomic datasets
fCCAC: functional canonical correlation analysis to evaluate covariance between nucleic acid sequencing datasets
FUEL-mLoc: feature-unified prediction and explanation of multi-localization of cellular proteins in multiple organisms
SeqLib: a C ++ API for rapid BAM manipulation, sequence alignment and sequence assembly
Expanding the toolkit for membrane protein modeling in Rosetta
ImpulseDE: detection of differentially expressed genes in time series data using impulse models
GENIUS: web server to predict local gene networks and key genes for biological functions
cerebroViz: an R package for anatomical visualization of spatiotemporal brain data
LEAP: constructing gene co-expression networks for single-cell RNA-sequencing data using pseudotime ordering
Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud
PyBoolNet: a python package for the generation, analysis and visualization of boolean networks
MetaboSignal: a network-based approach for topological analysis of metabotype regulation via metabolic and signaling pathways
CymeR: cytometry analysis using KNIME, docker and R
SPADEVizR: an R package for visualization, analysis and integration of SPADE results
Calypso: a user-friendly web-server for mining and visualizing microbiome-environment interactions
PhagesDB: the actinobacteriophage database
tranSMART-XNAT Connector tranSMART-XNAT connector—image selection based on clinical phenotypes and genetic profiles
SarConfoCal: simultaneous sarcomere length and cytoplasmic calcium measurements for laser scanning confocal microscopy images