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Accurate HER2 assessment is crucial for determining the prognosis of breast cancer patients and for selecting patients who are candidates for targeted therapy. In Egypt, all breast cancer cases are subjected to HER2 protein expression testing with immunohistochemistry (IHC). Only those patients with score 2 and selected cases of score 3 are subjected for further analysis using in-situ hybridization technique to detect HER2 gene status. Fluorescence in-situ hybridization (FISH) is considered the gold standard method, but recently newer alternative techniques such as chromogenic in-situ hybridization (CISH) have evolved. However, the cost of both FISH and CISH is considered an economic burden, especially in view of the increasing frequency of breast cancer cases in Egypt.This work aimed to analyze HER2 positivity results and report the concordance rate between IHC, CISH, and FISH techniques in invasive breast carcinomas using tissue microarray (TMA).A total of 46 invasive duct carcinoma paraffin blocks were retrieved, TMA was constructed, and then subjected to CISH and FISH analysis.There was no difference in results between FISH and CISH techniques in evaluating HER2 gene status with highly significant match, as concordance was 100%, κ value was 1, and P value was 0.001. All diagnostic indices (sensitivity, specificity, positive predictive value, negative predictive value, and efficacy) with regard to positive and negative cases were 100%. However, FISH is still the gold standard method, especially in the equivocal cases.HER2 testing by IHC and in-situ hybridization can be applied on TMA with high degree of sensitivity, specificity, and concordance. The low cost technique of TMA can replace automated TMAs in developing countries like Egypt, especially when using triplet cores.