PTU-030 RNA sequencing of colorectal cancer biospecimens characterises differential gene expression in old and young patients

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Abstract

Introduction

Incidence of colorectal cancer (CRC) increases with age, with older patients having a worse prognosis than younger patients. The underlying molecular features which lead to these age-related differences are unclear, but possible reasons include immune senescence or cellular senescence. Characterisation of differences in gene expression in cancers of older and younger patients, particularly genes driving the immune response to cancer, will contribute to our understanding of the differences between early- and late-presenting tumours and inform treatment strategies.

Methods

RNA was extracted from tumour cells and lymph nodes from three cohorts of patients with rectal cancer (n=47), stage 2 CRC (n=72) and stage 3 CRC (n=69). For the stage 3 CRC cohort, RNA was extracted from the primary tumour. After RNA-Sequencing, differential gene expression data was generated between older and younger patients in the Stage 3 cohort, with ‘old’ patients being one standard deviation (SD) above the median, and ‘young’ patients one SD below the median (median=72 years). Results were validated with a second cohort of Stage 3 CRC samples (n=78).

Results

In primary tumour samples from the stage 3 cohort, there were 581 genes differentially expressed between older and younger patients at p-adj <0.05, and 159 genes differentially expressed in metastatic lymph nodes between the two groups. In older patients, we found downregulation of the Oxidative Phosphorylation, MYC V1 and MYC V2 gene sets and, interestingly, downregulation of Unfolded Protein Response (UPR) genes. Under normal conditions, the UPR promotes apoptosis in conditions of prolonged cellular stress; downregulation of UPR genes may therefore enhance tumour survival by abrogating this response. Although downregulation of UPR genes may be a natural part of cellular senescence, this change might be exploited by late-presenting tumours.

Conclusions

Our results have shown that there are detectable differences in tumour and lymph node gene expression between older and younger patients; such findings may further enhance age-dependent personalised therapy. We have chosen to focus on age-related differential gene expression, but differences between other tumour phenotypes may also be investigated and likely to further enhance our biological understanding of cancer biology.

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