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We conducted swath bathymetry and gravity surveys the whole-length of the Yap Trench, lying on the southeastern boundary of the Philippine Sea Plate. These surveys provided a detailed morphology and substantial insight into the tectonics of this area subsequent the Caroline Ridge colliding with this trench. Horst and graben structures and other indications of normal faulting were observed in the sea-ward trench seafloor, suggesting bending of the subducting oceanic plate. Major two slope breaks were commonly observed in the arc-ward trench slope. The origin of these slope breaks is thought to be thrust faults and lithological boundaries. No flat lying layered sediments were found in the trench axis. These morphological characteristics suggest that the trench is tectonically active and that subduction is presently occurring. Negative peaks of Bouguer anomalies were observed over the arc-ward trench slope. This indicates that the crust is thickest beneath the arc-ward trench slope because the crustal layers on the convergent two plates overlap. Bouguer gravity anomalies over the northern portion of the Yap Arc are positive. These gravity signals show that the Yap Arc is uplifted by dynamic force, even though dense crustal layers underlie the arc. This overlying high density arc possibly forces the trench to have great water depths of nearly 9000 m. We propose a tectonic evolution of the trench. Subduction along the Yap Trench has continued with very slow rates of convergence, although the cessation of volcanism at the Yap Arc was contemporaneous with collision of the Caroline Ridge. The Yap Trench migrated westward with respect to the Philippine Sea Plate after collision, then consumption of the volcanic arc crust occurred, caused by tectonic erosion, and the distance between the arc and the trench consequently narrowed. Lower crustal sections of the Philippine Sea Plate were exposed on the arc-ward trench slope by overthrusting. Intense shearing caused deformation of the accumulated rocks, resulting in their metamorphism in the Yap Arc.