UpSetR: an R package for the visualization of intersecting sets and their properties

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Abstract

Motivation:

Venn and Euler diagrams are a popular yet inadequate solution for quantitative visualization of set intersections. A scalable alternative to Venn and Euler diagrams for visualizing intersecting sets and their properties is needed.

Results:

We developed UpSetR, an open source R package that employs a scalable matrix-based visualization to show intersections of sets, their size, and other properties.

Availability and implementation:

UpSetR is available at https://github.com/hms-dbmi/UpSetR/ and released under the MIT License. A Shiny app is available at https://gehlenborglab.shinyapps.io/upsetr/.

Contact:

nils@hms.harvard.edu

Supplementary information:

Supplementary data are available at Bioinformatics online.

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