ASAR: visual analysis of metagenomes in R

    loading  Checking for direct PDF access through Ovid

Abstract

Motivation

Functional and taxonomic analyses are critical steps in understanding interspecific interactions within microbial communities. Currently, such analyses are run separately, which complicates interpretation of results. Here we present the ASAR interactive tool for simultaneous analysis of metagenomic data in three dimensions: taxonomy, function, metagenome.

Results

An interactive data analysis tool for selection, aggregation and visualization of metagenomic data is presented. Functional analysis with a SEED hierarchy and pathway diagram based on KEGG orthology based upon MG-RAST annotation results is available.

Availability and implementation

Source code of the ASAR is accessible at GitHub (https://github.com/Askarbek-orakov/ASAR).

Related Topics

    loading  Loading Related Articles