A Replication Study for Association of LBX1 locus with Adolescent Idiopathic Scoliosis in French-Canadian Population
A case-control association study.Objectives.
To investigate the relationship between LBX1 polymorphisms and Adolescent Idiopathic Scoliosis (AIS) in French-Canadian population.Summary of Background Data.
It is widely accepted that genetic factors contribute to AIS. Although the LBX1 locus is so far the most successfully replicated locus in different AIS cohorts, these associations were replicated mainly in Asian populations, with few studies in Caucasian populations of European descent.Methods.
We recruited 1568 participants (667 AIS patients and 901 healthy controls) in the French-Canadian population. Genomic data was generated using the Illumina Human Omni 2.5 M BeadChip. An additional 121 AIS cases and 51 controls were genotyped for specific SNPs by multiplex PCR using standard procedures. BEAGLE 3 was used to impute the following markers: rs7893223, rs11190878 and rs678741 against the 1000-genomes European cohort phased genotypes given that they were absent in our GWAS panel. Resulting genotypes were combined then used for single marker and haplotyped-based association.Results.
Four markers showed association with AIS in our cohort at this locus; rs11190870 the most studied marker, rs7893223, rs594791, and rs11190878. When we restricted the analysis to severe cases only, four additional SNPs showed associations: rs11598177, rs1322331, rs670206 and rs678741. In addition, we analyzed the associations of the observed haplotypes and dihaplotypes formed by these SNPs. The haplotype TTAAGAAA and its homozygous dihaplotype showed the highest association with our severe group and was the highest risk haplotype. The haplotype CCGCAGGG was significantly more associated with the control group, and its homozygous or heterozygous dihaplotype was less frequent in the severe group compared to the control group, suggesting that CCGCAGGG may represent a protective haplotype.Conclusions.
We have replicated the association of the LBX1 locus with AIS in French-Canadian population, a novel European descent cohort, which is known for its unique genetic architecture.